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Metagenomics Market Advancing with Microbiome Research Breakthroughs and Expanding Applications in Healthcare and Agriculture, 2025-2032 | Coherent Market Insights
Metagenomics Market
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Global Metagenomics Market Key Takeaways
According to Coherent Market Insights (CMI), the global metagenomics market size is estimated to reach USD 2.36 Bn in 2025 and USD 4.13 Bn by 2032, registering a CAGR of 8.3%.
Based on product, reagents & consumables segment is expected to dominate the industry, accounting for a revenue of about USD 1.30 Bn in 2025.
By technology, shotgun sequencing segment is set to account for more than two-fifths of the global metagenomics market share in 2025.
Based on application, drug discovery segment is likely to hold a market share of 52.8% in 2025
As per Coherent Market Insights' latest metagenomics market analysis, North America is expected to retain its dominance, accounting for 38% of the global market share in 2025.
Asia Pacific metagenomics market is poised to experience fastest growth during the assessment period.
Rising Prevalence of Chronic and Infectious Diseases Fueling Market Growth
A new report by Coherent Market Insights outlines prominent metagenomics market growth factors. One such growth driver is the increasing incidence of chronic and infectious diseases worldwide.
Rise in chronic and infectious diseases necessitates rapid and accurate identification of pathogens, including rare and complex microbial infections. This is where metagenomics steps in.
Metagenomics offers a powerful tool for identifying novel pathogens as well as analyzing disease-related microbiomes. Thus, rising prevalence of chronic and infectious diseases, coupled with growing demand for enhanced diagnostics technologies, is expected to boost growth of metagenomics market during the forecast period.
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High Cost of Sequencing Technologies Restraining Market Growth
The future metagenomics market outlook looks bright. However, high cost of advanced metagenomic sequencing instruments poses a barrier to widespread market expansion.
Sequencing platforms required for advanced metagenomic analysis are quite expensive. This limits their adoption, especially across low- and middle-income regions, thereby reducing overall metagenomics market demand.
Advancements in Genomic Technologies Opening New Growth Opportunities
Ongoing innovations in next-generation sequencing (NGS), shotgun metagenomics, and bioinformatics tools are making metagenomics studies faster as well as more accurate and cost-effective. These technological advancements are expected to unlock new growth opportunities for metagenomics companies during the forecast period.
Impact of AI on the Metagenomics Market
Artificial Intelligence (AI) is emerging as a powerful tool in the metagenomics market. It has the potential to enhance data analysis, pattern recognition, and predictive modeling.
AI tools speed up and improve the analysis of complex microbial data. They help identify new microorganisms, gene functions, and disease links more precisely. This accelerates the discovery of therapeutic targets, environmental monitoring, and microbiome research.
Leading players like Thermo Fisher Scientific and Illumina are increasing this AI trend. For instance, in 2025, Thermo Fisher Scientific launched a new AI-enhanced metagenomics data analytics platform aimed at improving accuracy and speed of microbial classification.
Emerging Metagenomics Market Trends
Growing demand for precision medicine is a key growth-shaping trend in the market. Metagenomics provides insights into the microbiome's role in health and diseases, thereby enabling the development of targeted therapies.
Many nations are increasingly investing in microbiome research projects like the Human Microbiome Project. This will further boost metagenomics market growth during the forecast period.
Expanding applications in environmental and agricultural microbiology are expected to play a key role in boosting the metagenomics market value. Metagenomics is being widely used to assess microbial diversity in water, soil, and waste treatment systems.
There is also a growing trend of using AI and ML for analyzing vast metagenomic datasets. Such innovations are expected to create lucrative opportunities for metagenomic product manufacturers.
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Analyst's View
" The global metagenomics industry is expected to experience rapid growth, owing to rising incidence of chronic and infectious diseases, expanding usage of metagenomics in drug discovery, and advancements in genomic technologies," said senior analyst Abhijeet Kale.
Current Events and Their Impact on the Metagenomics Market
Event
Description and Impact
Post-Pandemic Acceleration of Genome Research Funding
* Description: Global research funding for microbiome studies is increasing, with emphasis on infectious disease surveillance and pandemic preparedness.
* Impact: This drives demand for clinical-grade metagenomic platforms for rapid pathogen detection and variant tracking.
AI & Deep Learning Revolution in Microbiome Analysis
* Description: LLMs and AI tools are now being used for microbial functional annotation and strain-level resolution.
* Impact: These technologies improve the speed and accuracy of interpreting complex metagenomic datasets, enhancing applications across clinical diagnostics, environmental monitoring, and agriculture.
Strategic M&A Activity
* Description: In May 2025, Mapmygenome (India) acquired Canadian CRO Microbiome Insights to scale up global sequencing operations.
* Impact: Such strategic mergers and acquisitions strengthen international presence and diversify service portfolios, fostering market consolidation in the metagenomics sector.
Competitor Insights
Key companies listed in metagenomics market report:
- Illumina, Inc.
- Bio-Rad Laboratories, Inc.
- QIAGEN
- PerkinElmer, Inc.
- Novogene Co., Ltd.
- Thermo Fisher Scientific, Inc.
- Promega Corporation
- Oxford Nanopore Technologies
- Takara Bio, Inc.
- PacBio
- F. Hoffmann-La Roche Ltd
Key Developments
In April 2025, Metabolon introduced the Microbiome Research Solution for high-quality metagenomics and metabolomics data. It combines novel microbiome panel, metagenomics sequencing, and multiomics bioinformatics tools to create the industry's most powerful microbiome research toolkit.
In July 2024, MGI Tech launched Human Microbiome Metagenomics Sequencing Package. This comprehensive solution encompasses the full workflow of human microbiome metagenomics sequencing, from sample collection and extraction to library preparation, sequencing, and analysis. The package features high automation and flexible throughput.
Market Segmentation
Product Insights (Revenue, USD Bn, 2020 - 2032)
Reagents & Consumables
Instruments
Sequencing & Data Analytics Services
Technology Insights (Revenue, USD Bn, 2020 - 2032)
Shotgun Sequencing
16S Sequencing
Whole Genome Sequencing
Others
Application Insights (Revenue, USD Bn, 2020 - 2032)
Drug Discovery
Clinical Diagnostics
Others
End User Insights (Revenue, USD Bn, 2020 - 2032)
Pharmaceutical Companies
Research Laboratories
Others
Regional Insights (Revenue, USD Bn, 2020 - 2032)
North America
U.S.
Canada
Latin America
Brazil
Argentina
Mexico
Rest of Latin America
Europe
Germany
U.K.
Spain
France
Italy
Russia
Rest of Europe
Asia Pacific
China
India
Japan
Australia
South Korea
ASEAN
Rest of Asia Pacific
Middle East
GCC Countries
Israel
Rest of Middle East
Africa
South Africa
North Africa
Central Africa
About Us:
Coherent Market Insights leads into data and analytics, audience measurement, consumer behaviors, and market trend analysis. From shorter dispatch to in-depth insights, CMI has exceled in offering research, analytics, and consumer-focused shifts for nearly a decade. With cutting-edge syndicated tools and custom-made research services, we empower businesses to move in the direction of growth. We are multifunctional in our work scope and have 450+ seasoned consultants, analysts, and researchers across 26+ industries spread out in 32+ countries.
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